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Publications

Peer-reviewed articles​

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  • Singhal K, Dhamija S, Mukerji M (2023) Exonized Alu repeats in the 3'UTR of a CYP20A1_Alu-LT transcript act as a miRNA sponge. BMC Research Notes, Mar 9; 16(1):32.                                                                                               Citations: 0 / IF2020: n.a.

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  • Kumar A, Goyal N, Saranathana N, Dhamija S, Saraswat S, Menon MB and Vivekanandan P (2022). The slowing rate of CpG depletion in SARS-CoV-2 genomes is consistent with adaptations to the human host. Molecular Biology and Evolution, 39(3):msac029.                                                                                                                      Citations: 6 / IF2020: 11.062

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  • Menon MB, Yakovleva T, Ronkina N, Suwandi A, Odak I, Dhamija S, Sandrock I, Hansmann F, Baumgärtner W, Forster R, Kotlyarov A, Gaestel M (2022). Lyz2-Cre-mediated genetic deletion of Septin7 reveals a role of septins in macrophage cytokinesis and Kras-driven tumorigenesis. Frontiers in Cell and Developmental Biol., 9:795798.     https://doi.org/10.3389/fcell.2021.795798                                    Citations: 1 / IF2020: 6.684

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  • Pal J, Becker A, Dhamija S, Seiler J, Abdelkarim M, Sharma Y, Behr J, Meng C, Ludwig C, Kuster B & Diederichs S (2021). Systematic analysis of migration factors by MigExpress identifies essential cell migration control genes in non-small cell lung cancer. Molecular Oncology, 15:1797-1817.                                                                Citations: 5 / IF2020: 6.603

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  • Dhamija S, Yang CM, Seiler J, Myacheva K, Caudron-Herger M, Wieland A, Abdelkarim M, Sharma Y, Riester M, Groß M, Maurer J & Diederichs S (2020). A pan-cancer analysis reveals nonstop extension mutations causing SMAD4 tumor suppressor degradation. Nature Cell Biology, 22: 999-1010.                                              Citations: 9 / IF2019: 20.042

 

  • Dhamija S, Becker AC, Sharma Y, Myacheva K, Seiler J and Diederichs S (2019). LINC00261 and the adjacent gene FOXA2 are epithelial markers and are suppressed during lung cancer tumorigenesis and progression. Non-coding RNA, 5 (1), 2.                                                                                                                               Citations: 18 / IF2018: n.a.

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  • Menon MB & Dhamija S (2018). Beclin 1 Phosphorylation - at the Center of Autophagy Regulation. Frontiers in Cell & Developmental Biol. 6:137.    Citations: 216 / IF2018: 5.206

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  • Dhamija S* & Menon MB* (2018). Non-coding transcript variants of protein-coding genes - what are they good for? RNA Biology, 15: 1025-1031. *Corresponding author                                                                                                                          Citations: 59 / IF2017: 5.216

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  • Vučićević D, Gehre M, Dhamija S, Friis-Hansen L, Meierhofer D, Sauer S, Ørom UA (2016) The long non-coding RNA PARROT is an upstream regulator of c-Myc and affects proliferation and translation. Oncotarget (2016), 7: 33934-47.    Citations: 7 / IF2016: 5.168

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  • Dhamija S & Diederichs S (2016) From junk to master regulators of invasion: lncRNA functions in migration, EMT and metastasis. International Journal of Cancer, 139: 269-80.                                                                                                        Citations: 267 / IF2016: 6.513

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  • Menon MB, Dhamija S, Kotlyarov A & Gaestel M (2015) The problem of pyridinyl imidazole class inhibitors of MAPK14/p38α-MAPK11/p38β in autophagy research. Autophagy 11: 1425-1427.                                                            Citations: 22 / IF2015: 9.108

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  • Dhamija S, Winzen R, Doerrie A, Behrens G, Kuehne N, Schauerte C, Neumann E, Dittrich-Breiholz O, Kracht M & Holtmann H (2013) Interleukin-17 (IL-17) and IL-1 activate translation of overlapping sets of mRNAs, including that of the negative regulator of inflammation, MCPIP1. J Biological Chem. 288: 19250-19259.     Citations: 22 / IF2013: 4.6

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  • Tiedje, C, Ronkina, N, Tehrani, M, Dhamija S, Laass K, Holtmann H, Kotlyarov A & Gaestel M (2012) The p38/MK2-driven exchange between tristetraprolin and HuR regulates AU-rich element-dependent translation. PLoS Genetics 8: e1002977.                                                                                                                        Citations: 237 / IF2012: 8.517

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  • Dhamija S, Kuehne N, Winzen R, Doerrie A, Dittrich-Breiholz O, Thakur BK, Kracht M & Holtmann H (2011) Interleukin-1 activates synthesis of interleukin-6 by interfering with a KSRP-dependent translational silencing mechanism. J Biological Chem. 286: 33279-33288.                                                                                             Citations: 59 / IF2010: 4.773

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  • Dhamija S, Doerrie A, Winzen R, Dittrich-Breiholz O, Taghipour A, Kuehne N, Kracht M & Holtmann H (2010) IL-1-induced post-transcriptional mechanisms target overlapping translational silencing and destabilizing elements in IκBzeta mRNA. J Biological Chem. 285: 29165-29178.                                                                          Citations: 39 / IF2010: 5.328

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  • Winzen R, Thakur BK, Dittrich-Breiholz O, Shah M, Redich N, Dhamija S,Kracht M & Holtmann H (2007) Functional analysis of KSRP interaction with the AU-rich element of interleukin-8 & identification of inflammatory mRNA targets.  Molecular Cell Biol. 27: 8388-8400.                                                                                   Citations: 167 / IF2007: 6.420

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Book chapters

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  • Dhamija S & Menon MB. Long non-coding RNAs as scaffolds for multiprotein signalling complexes (2020). In  “RNA Technologies” Springer Series Vol. 10: The Chemical Biology of Long Noncoding RNAs, 10: 131-147.  

                         

  • Dhamija S* & Menon MB. Measuring lncRNA expression by Real time PCR (2021). Methods in Molecular Biology: Long non-coding RNAs in Cancer, 2348:93-111. *Corresponding author

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Other publications

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  • Published preprint: Mishra A, Pandey AK, Gupta P, Pradhan P, Dhamija S, Gomes J, Kundu B, Vivekanandan P, and Menon MB (2020). Mutation landscape of SARS-CoV-2 reveals five mutually exclusive clusters of leading and trailing single nucleotide substitutions. bioRxiv, 2020.2005.2007.082768.

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  • Published Abstract: Moneke I, Dhamija S, Becker A, Jung M, Hauser A, Luebbert M, Passlick B & Diederichs S. P3. 13-32. Drug Sensitivity of Lung Adenocarcinoma Towards Inducers of Epigenetic Modifications. Journal of Thoracic Oncology. 2018. 13 (10), S989.

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  • Published Abstract: Moneke I, Dhamija S, Becker AC, Jung M, Hauser AT, Luebbert M, Passlick B & Diederichs S. Sensitivität des Adenokarzinoms der Lunge für epigenetisch aktive Wirkstoffe. Zentralblatt für Chirurgie-Zeitschrift für Allgemeine, Viszeral-, Thorax-und Gefäßchirurgie. 2018. 143: S 01-V209.

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  • Published Abstract: Behrens G, Winzen R, Dörrie, Dhamija S, Holtmann H. Functional characteristics of a translational silencing element in the mrna of Iκbζ. 2015. The FEBS Journal. 281.18. 

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  • Published Abstract: Dhamija S, Winzen R, Doerrie A, Behrens G, Kuehne N Schauerte C, Neumann E, Dittrich-Breiholz O, Kracht M, Holtmann H. Translational activation of anti-inflammatory RNase MCPIP1 by the pro-inflammatory cytokines IL-1 and IL-17. CSHL meeting on ‘Translational Control’ - Cold Spring Harbor, New York, U.S.A., 2012.

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  • Published Abstract: Dhamija S, Doerrie A, Winzen R, Dittrich-Breiholz O, Taghipour A, Kuehne N, Kracht M & Holtmann H. IL-1-induced post-transcriptional mechanisms target overlapping translational silencing and destabilizing elements in IκBζ mRNA CSHL meeting on ‘Translational Control’ - Cold Spring Harbor, New York, U.S.A., 2010. p130.

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Patents

 

  • Kundu B, Mishra A, Gupta P, Pandey AK, Pradhan P, Menon MB, Gomes J, Perumal V, Dhamija S. Primer sets, Biomarkers, Kit and Applications thereof (COVID-19). Indian & International (PCT) patent filed. US patent application#17422575; Pub . No .: US 2022/0002824 A1 & date: Jan 06, 2022.

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